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  • Collaborating With Us
    • How To Work With Us
    • Who We Are
  • HiPerGator Computing
    • file-naming-conventions
    • HiPerGator Demo
    • HiPerGator for Bioinformatics
  • Git and GitHub
    • Git - Collaboration
    • Git Tips
    • GitHub Actions
    • RStudio + Git
  • Command Line Tools
    • File Compression Notes
    • SSH
  • R and Python Programming
    • Code Style Guide
    • Lab Coding Guidelines
    • Parallelizing Code in R
    • Python - Package Docs
    • R Resources
    • Software Testing in R
  • Workflow Management
    • Workflow Tools
  • Building and Deploying Web Applications
  • UFHCC BCB-SR In-House Tools
  • Experimental Design
    • RNA-seq
    • scRNA-seq
    • ATAC-seq
  • Analysis of Omics Data by Assay
    • RNA-seq
    • ATAC-seq
    • scRNA-seq
    • CRISPR Screen
  • Downstream Analysis
    • Pathway Analysis
  • Data Visualization
  • Data Sharing and Transfer
    • rclone
    • Globus for file transfer
  • Grant Proposal Resources and Support
    • DMSP
    • Publication Figures
    • Key Personnel
    • Bioinformatics Plan
  • Publishing Bioinformatics Methods
    • Code Availability Statment
    • Data Availability Statement
    • Publication Figures
    • Authorship
  • Web Applications
  • Presentations
  • Subscribe to Bioinformatics Updates
  • Bioinformatics Blog Posts, Papers, and News
    • Bioinformatics Blogs
    • Journal Club Papers
    • ST4US Journal Club Discussion Questions
  • Miscellaneous
  • Search Results
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UF Health Cancer Center Bioinformatics Hub
Command Line Tools

Command Line Tools

Master the command line tools that form the backbone of bioinformatics work. This section covers file management, remote connections, data compression, and other essential command line skills.

File Compression Notes SSH

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